jejuni 113 82 see more (73) 24 (21) 7 (6) C. jejuni 14 12 (86) 1 (7) 1 (7) human C. jejuni 244 190 (78) 27 (11) 27 (11) C. coli 25 17 (68) 8 (32) 0 bovine manure C. jejuni 33 29 (88) 3 (9) 1 (3) swine manure C. jejuni 4 1 (25)
3 (75) 0 C. coli 21 21 (100) 0 0 other non-human C. jejuni 11 9 (82) 1 (9) 1 (9) C. coli 6 6 (100) 0 0 Total 496 381 (77) 74 (15) 41 (8) There appeared to be a somewhat stronger association of ORF11 with multi-locus sequence types (ST) 21, 48, 460, 508, and 982 (Table 5). Similarly, CJIE1 alone was found more frequently in STs 42 and 50. Associations of CJIE1 alone with other STs were less certain due to the small number of isolates detected for each ST. All isolates belonging to STs 137, 429, and 939 carried CJIE1, but only 2–3 isolates of each ST were available. Similarly, ORF 11 was found with higher frequency in flaA SVR types 34, 36, 46, 49, and 172 (Table 6). Table 5 Frequency of carriage of CJIE1 prophage and ORF11 within the predominant multi-locus sequence types CB-839 (ST) ST Total in each ST No CJIE1 no
Orf 11 (%) With CJIE1 alone (%) With CJIE1 + ORF11 (%) 8 10 9/10 (90) 0 1/10 (10) 21 25 16/25 (64) 4/25 (16) 5/25 (20) 42 15 8/15 (53) 7/15 (47) 0 45 91 84/91 (92) 5/91 (6) 2/91 (2) 48 11 8/11 (73) 0 3/11 (27) 50 9 7/9 Adenosine triphosphate (78) 2/9 (22) 0 52 7 7/7 (100) 0 0 61 7 7/7 (100) 0 0 137 2 0 2/2 (100) 0 267 8 7/8 (88) 1/8 (12) 0 353 8 7/8 (88) 1/8 (12) 0 429 3 0 3/3 (100) 0 459 15 14/15 (93) 0 1/93 (7) 460 9 7/9 (78) 1/9 (11) 1/9 (11) 508 7 6/7 (86) 0 1/7 (14) 806 8 7/8 (88) 1/8 (12) 0 922 13 13/13
(100) 0 0 929 13 13/13 (100) 0 0 939 2 0 2/2 (100) 0 982 38 27/38 (71) 5/38 (13) 6/38 (16) 1068 14 12/14 (86) 2/14 (14) 0 Total 315 259/315 (82) 36/315 (11) 20/315 (6) Table 6 Frequency of carriage of CJIE1 prophage and ORF11 within the predominant flaA SVR types flaA SVR Total in each type No CJIE1 no Orf 11 (%) With CJIE1 alone (%) With CJIE1 + ORF11 (%) 2 7 7/7 (100) 0 0 5 6 5/6 (83) 0 1/6 (17) 8 13 10/13 (77) 3/13 (23) 0 9 8 7/8 (88) 1/8 (12) 0 11 6 5/6 (83) 1/6 (17) 0 13 12 10/12 (83) 2/12 (17) 0 14 28 26/28 (93) 1/28 (3.5) 1/28 (3.5) 16 23 21/23 (91) 2/23 (9) 0 18 16 14/16 (88) 2/16 (12) 0 21 59 55/59 (93) 2/59 (3.5) 2/59 (3.